IN FOCUS: 3D Pollen Prints Not To Be Sniffed At: Printing Pollen for the Met Office.IN FOCUS: Virtual Microscopy Image Database: An Update.IN FOCUS: Making Your Mind Up: 3D Printing of Brains for Cardiff Museum’s Brain Games, 2018.
#Zoomify histology upgrade#
CORE EQUIPMENT: Fast Module Upgrade for the Zeiss LSM880 Airyscan Confocal Microscope.SPOKE EQUIPMENT: X-Clarity Tissue Clearing System.IN-FOCUS: Making Imaris a Bit(plane) Faster.pyramidal format JPEG2000 - Aperio Mscope Aurora Zoomify - pyramidal. IN FOCUS: Imaging Cleared Tissues by Lightsheet Microscopy. How does it fit your educational pedagogyfor teaching histology/pathology.IN FOCUS: Standard Operation Procedures (SOP) Repository.IN FOCUS: Immersive Microscopy – 3D Visualisation and Manipulation of Microscopic Samples Through Virtual Reality.IN FOCUS: Winging It In Paleobiology: Strange Tails from a Strange Time.CORE EQUIPMENT: Widefield Microscope Upgrades.IN FOCUS: Plastic Fantastic – Making Pollen Models for The National Botanic Garden of Wales.IN FOCUS: Bioimaging Hub’s YouTube Channel – Rebooted.NEWS: Reopening of the Bioimaging Research Hub: New COVID 19-Security Measures.SPOKE EQUIPMENT: Olympus VS200 High Throughput Slide Scanning Microscope.IN-FOCUS: Brushing Up On Your Background Knowledge.NEWS: Updated Covid Rules: Resumption of Hands-on Support and Training.CORE EQUIPMENT: New Zeiss Celldiscoverer 7 system.NEWS: New BIOSI Live Cell Imaging Spoke.Post navigation ← CORE EQUIPMENT: New Bitplane Imaris Workstation for Advanced 3D/4D Image Processing. This entry was posted in news and tagged equipment, news on Novemby Anthony Hayes. Hamilton et al (2012) Virtual microscopy and digital pathology in training and education.Ghaznavi et al (2013) Digital imaging in pathology: whole slide imaging and beyond.Thanks to all concerned who have taken the project this far… With further development, the resource promises to have fantastic potential for teaching, research and public engagement within BIOSI. The database is currently set up on a basic Linux server within the facility however, to cope with concurrent file access by large numbers of up to 150 students, it will require a permanent home on a dedicated server within the School. The image files have been linked, via thumbnails, to a database that captures all relevant metadata for each histological section (filename, tissue type, organ system, species, section plane, histological stain, section ID, supplier, objective magnification etc) to facilitate easy sorting and data retrieval. The datasets, totalling 4TB, have been converted into the Zoomify .ziff image file format to enable easy and rapid on-line browsing, zooming and navigation (similar to that of Google Earth) and calibrated to allow feature measurement. Over 400 histological sections, encompassing both normal and pathological tissues, were painstakingly scanned and digitised in high resolution using the facilities Objective Imaging Surveyor slide scanning system. The Bioimaging Hub has recently completed work in digitising the School’s extensive histopathology slide repository. Both local users and worldwide users actively and repeatedly view cases in our study set.Image: The virtual histology slide box and viewer – a resource that holds fantastic potential for BIOSI teaching, research and public engagement. Our trainees are very satisfied with the freedom to preview either the glass slides or WSI and review the WSI postconference. Conclusions: We implemented a low-cost, publicly available repository of WSI slides for resident education. Worldwide, 955 unique IP addresses from 52 countries have viewed cases in our site. Residents are able to review cases from home and from their mobile devices. Based on resident evaluations, the interface was easy to use and demonstrated minimal latency. Over 16 months, we uploaded 1366 cases from 77 conferences and ten study sets, occupying 793.5 GB of cloud storage. Results: Residents preferred our OpenLayers WSI implementation to Ventana Virtuoso, Google Maps API, and OpenSlide. We measured site utilization and conference participation. We then scanned weekly unknown conference cases and study set cases and uploaded them to our custom built WSI viewer located at. Materials and Methods: We surveyed residents regarding their preference between four unique WSI systems. Our objective was to create an inexpensive whole slide image (WSI) education suite to address these limitations and improve the education of pathology trainees. However, the cases have not been previously available digitally, have not been collated for postconference review, and were not accessible to a wider audience. Background: Our institution's pathology unknown conferences provide educational cases for our residents.
0 kommentar(er)
